COVID-19 Reproduction Number Estimation: Spatial and Temporal in Convex Optimization to Promote Piecewise Smoothness

Among the different indicators that quantify the spread of an epidemic such as the on-going COVID-19, stands first the reproduction number which measures how many people can be contaminated by an infected person. In order to permit the monitoring of the evolution of this number, a new estimation procedure is proposed here, assuming a well-accepted model for current incidence data, based on past observations [1]. The novelty of the proposed approach [2] is twofold: 1) the estimation of the reproduction number is achieved by convex optimization within a proximal-based inverse problem formulation, with constraints aimed at promoting piecewise smoothness; 2) the approach is developed in a multivariate setting, allowing for the simultaneous handling of multiple time series attached to different geographical regions, together with a spatial (graph-based) regularization of their evolutions in time. The effectiveness of the approach is first supported by simulations, and two main applications to real COVID-19 data are then discussed. The first one refers to the comparative evolution of the reproduction number for a number of countries, while the second one focuses on French departments and their joint analysis, leading to dynamic maps revealing the temporal co- evolution of their reproduction numbers. Additionally, we will report new work showing how to deal, in this framework, with outliers coming from errors in data reporting or other events.

Συνεδρία: 
Authors: 
Patrice Abry, Nelly Pustelnik, Roux Stephane, Pablo Jensen, Patrick Flandrin, Rémi Gribonval, Charles-Gérard Lucas, Eric Guichard, Pierre Borgnat and Nicolas Garnier
Room: 
2
Date: 
Monday, December 7, 2020 - 16:40 to 16:55

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